I'm an Associate Professor at the Semantic, Cybersecurity and Service group at the University of Twente and at the BioSemantics group, in the department of Human Genetics at the Leiden University Medical Center.
My main research topics are the FAIR principles, semantic interoperability, ontology-driven conceptual modelling and intelligent systems design. Since 2014 I have been closely involved in designing and leading the implementation of a number of technologies and approaches to support the realisation of the FAIR principles.
Expertise
Computer Science
- Interoperability
- Ontology
- User
- Models
- Metadata
- Domains
- Conceptual Model
- Digital Object
Organisations
Together with my position at the University of Twente, I am also Associate Professor in the BioSemantics Group at the Leiden University Medica Center, in Leiden, the Netherlands.
Since 2014 I have been closely involved in the FAIR principles (findable, accessible, interoperable and reusable) movement. More specifically, I have participated in the research, design and development of a number of approaches and technologies to enable and/or facilitate the realisation of the FAIR principles such as FAIR metrics, FAIR Data Point, FAIRifier, FAIR Data Train and FAIR Digital Objects Framework.
Publications
2024
Agriculture Product Types Ontology (APTO) (2024)[Dataset Types › Dataset]. Zenodo. Miranda Soares, F., Ferreira Pires, L., Bonino, L., Corrêa, F. E., de Abreu Moreira, D., Pignatari Drucker, D., Braghetto, K. R., Botazzo Delbem, A. C., Mauro Saraiva, A. & Olavo Bonino da Silva Santos, L.https://doi.org/10.5281/zenodo.13271284Agriculture and Livestock Metadata Elements Set (Almes Core) (2024)[Dataset Types › Dataset]. Zenodo. Soares, F., Corrêa, F. E., de Abreu Moreira, D., Pignatari Drucker, D., Braghetto, K. R., Delbem, A. C. B., Ferreira Pires, L., Bonino, L. & Saraiva, A. M.https://doi.org/10.5281/zenodo.12711289Supporting Data for "A LLM-Based Solution for Managing Species Names in Ontologies" (2024)[Dataset Types › Dataset]. Zenodo. Soares, F., Saraiva, A. M., Ferreira Pires, L., Bonino, L., de Abreu Moreira, D., Corrêa, F. E., Braghetto, K. R., Pignatari Drucker, D. & Botazzo Delbem, A. C.https://doi.org/10.5281/zenodo.12684940A study on interoperability between two Personal Health Train infrastructures in leukodystrophy data analysis (2024)Scientific Data, 11(1). Article 663. Welten, S., de Arruda Botelho Herr, M., Hempel, L., Hieber, D., Placzek, P., Graf, M., Weber, S., Neumann, L., Jugl, M., Tirpitz, L., Kindermann, K., Geisler, S., Bonino da Silva Santos, L. O., Decker, S., Pfeifer, N., Kohlbacher, O. & Kirsten, T.https://doi.org/10.1038/s41597-024-03450-6Building expertise on FAIR through evolving Bring Your Own Data (BYOD) workshops: describing the data, software, and management- focused approaches and their evolution (2024)Data Intelligence, 6(2), 429-456. Bernabé, C. H., Thielemans, L., Kaliyaperumal, R., Carta, C., Zhang, S., van Gelder, C. W. G., Benis, N., da Silva Santos, L. O. B., Cornet, R., Vieira, B. d. s., Lalout, N., Henriques, I., Ballesteros, A. c., Burger, K., Kersloot, M. g., Ehrhart, F., Van enckevort, E., Evelo, C. t., Gray, A. j. g., … Jacobsen, A.https://doi.org/10.1162/dint_a_00236Why Adverse Outcome Pathways Need to be FAIR (2024)Alternatives to Animal Experimentation, 40(4), 50-56. Wittwehr, C., Clerbaux, L. A., Edwards, S., Angrish, M., Mortensen, H., Carusi, A., Gromelski, M., Lekka, E., Virvilis, V., Martens, M., da Silva Santos, L. O. B. & Nymark, P.https://doi.org/10.14573/altex.2307131FAIR Data Train: A FAIR-Compliant Distributed Data and Services Platform (2024)In Advanced Information Systems Engineering: 36th International Conference, CAiSE 2024, Limassol, Cyprus, June 3–7, 2024, Proceedings (pp. 637-638) ( Lecture Notes in Computer Science; Vol. 14663). Bonino da Silva Santos, L. O.What Do I Get from Modeling?: An Empirical Study on Using Structural Conceptual Models (2024)In Enterprise Design, Operations, and Computing: 27th International Conference, EDOC 2023, Groningen, The Netherlands, October 30 – November 3, 2023, Proceedings (pp. 21-38) (Lecture Notes in Computer Science; Vol. 14367). Springer. Valle Sousa, I., Prince Sales, T., Guerra, E., Olavo Bonino da Silva Santos, L. & Guizzardi, G.https://doi.org/10.1007/978-3-031-46587-1_2
2023
Towards a Conceptual Model for the FAIR Digital Object Framework (2023)In Formal Ontology in Information Systems: Proceedings of the 13th International Conference (FOIS 2023) (pp. 227-241) (Frontiers in Artificial Intelligence and Applications; Vol. 377). IOS. Bonino da Silva Santos, L. O., Sales, T. P., Fonseca, C. M. & Guizzardi, G.https://doi.org/10.3233/FAIA231131The use of foundational ontologies in biomedical research (2023)Journal of Biomedical Semantics, 14(1). Article 21. Bernabé, C. H., Queralt-Rosinach, N., Silva Souza, V. E., Bonino da Silva Santos, L. O., Mons, B., Jacobsen, A. & Roos, M.https://doi.org/10.1186/s13326-023-00300-zJoint Proceedings of the Onto4FAIR 2023 Workshops: collocated with 13th International Conference on Formal Ontology in Information Systems, FOIS 2023, Sherbrooke, QC, Canada, July 20, 2023 and 19th International Conference on Semantic Systems, SEMANTICS 2023 (2023)[Book/Report › Book editing] 13th International Conference on Formal Ontology in Information Systems, FOIS 2023. HAL. Trojahn, C., Santos, L. O. B. d. S., Guizzardi, G., Jonquet, C., Katsumi, M., Sanfilippo, E. M., D'Souza, J. & Rula, A.A FAIR catalog of ontology-driven conceptual models (2023)Data & knowledge engineering, 147. Article 102210. Sales, T. P., Barcelos, P. P. F., Fonseca, C. M., Souza, I. V., Romanenko, E., Bernabé, C. H., Bonino da Silva Santos, L. O., Fumagalli, M., Kritz, J., Almeida, J. P. A. & Guizzardi, G.https://doi.org/10.1016/j.datak.2023.102210FAIR Data Point (2023)[Dataset Types › Dataset]. Zenodo. Bonino da Silva Santos, L. O., Burger, K., Kaliyaperumal, R., Suchánek, M., Slifka, J. & Wilkinson, M.https://doi.org/10.5281/zenodo.8229205Lifetime extension assessment of collected washing machines (2023)[Thesis › EngD Thesis]. University of Twente. Stiksma, F.FAIR Data Point (2023)[Dataset Types › Dataset]. Zenodo. Bonino da Silva Santos, L. O., Burger, K., Kaliyaperumal, R., Suchánek, M., Slifka, J. & Wilkinson, M.https://doi.org/10.5281/zenodo.8146433The FAIR Data Point: Interfaces and Tooling (2023)Data Intelligence, 5(1), 184-201. Benhamed, O. M., Burger, K., Kaliyaperumal, R., Santos, L. O. B. d. S., Suchánek, M., Slifka, J. & Wilkinson, M. D.https://doi.org/10.1162/dint_a_00161FAIR Data Point: A FAIR-Oriented Approach for Metadata Publication (2023)Data Intelligence, 5(1), 163-183. Santos, L. O. B. d. S., Burger, K., Kaliyaperumal, R. & Wilkinson, M. D.https://doi.org/10.1162/dint_a_00160Towards a conceptual model for the FAIR Digital Object Framework (2023)[Working paper › Preprint]. ArXiv.org. Santos, L. O. B. d. S., Sales, T. P., Fonseca, C. M. & Guizzardi, G.https://doi.org/10.48550/arXiv.2302.11894FAIRDataTeam/FAIRDataPoint (2023)[Dataset Types › Dataset]. Zenodo. Bonino, L., Burger, K., Kaliyaperumal, R., Suchánek, M., Slifka, J., Wilkinson, M. D., Knaisl, V., van Leeuwen, S., Kuzniar, A., Willighagen, E., Schulz, J., Leeuwen, S. v. & Gavai, A.https://doi.org/10.5281/zenodo.6328729A goal-oriented method for FAIRification planning (2023)CEUR workshop proceedings, 3618. Bernabé, C. H., Sales, T. P., Schultes, E., van Ulzen, N., Jacobsen, A., da Silva Santos, L. O. B., Mons, B. & Roos, M.
Research profiles
Courses academic year 2024/2025
Courses in the current academic year are added at the moment they are finalised in the Osiris system. Therefore it is possible that the list is not yet complete for the whole academic year.
Courses academic year 2023/2024
Address
University of Twente
Zilverling (building no. 11), room 2005
Hallenweg 19
7522 NH Enschede
Netherlands
University of Twente
Zilverling 2005
P.O. Box 217
7500 AE Enschede
Netherlands
Scan the QR code or