Overview Research Education Contact
I'm an Associate Professor at the Semantic, Cybersecurity and Service group at the University of Twente and at the BioSemantics group, in the department of Human Genetics at the Leiden University Medical Center.
My main research topics are the FAIR principles, semantic interoperability, ontology-driven conceptual modelling and intelligent systems design. Since 2014 I have been closely involved in designing and leading the implementation of a number of technologies and approaches to support the realisation of the FAIR principles.
Expertise Computer Science Interoperability Ontology User Models Metadata Domains Conceptual Model Digital Object Organisations Together with my position at the University of Twente, I am also Associate Professor in the BioSemantics Group at the Leiden University Medica Center, in Leiden, the Netherlands.
Since 2014 I have been closely involved in the FAIR principles (findable, accessible, interoperable and reusable) movement. More specifically, I have participated in the research, design and development of a number of approaches and technologies to enable and/or facilitate the realisation of the FAIR principles such as FAIR metrics, FAIR Data Point, FAIRifier, FAIR Data Train and FAIR Digital Objects Framework.
Publications 2024
Why Adverse Outcome Pathways Need to be FAIR , 50-56. Wittwehr, C., Clerbaux, L. A., Edwards, S., Angrish, M., Mortensen, H., Carusi, A. , Gromelski, M., Lekka, E., Virvilis, V., Martens, M., da Silva Santos, L. O. B. & Nymark, P. https://doi.org/10.14573/altex.2307131 What Do I Get from Modeling?: An Empirical Study on Using Structural Conceptual Models In Enterprise Design, Operations, and Computing: 27th International Conference, EDOC 2023, Groningen, The Netherlands, October 30 – November 3, 2023, Proceedings (pp. 21-38). Springer. Valle Sousa, I., Prince Sales, T. , Guerra, E., Olavo Bonino da Silva Santos, L. & Guizzardi, G. https://doi.org/10.1007/978-3-031-46587-1_2 2023
Towards a Conceptual Model for the FAIR Digital Object Framework In Formal Ontology in Information Systems: Proceedings of the 13th International Conference (FOIS 2023) (pp. 227-241). IOS. Bonino da Silva Santos, L. O. , Sales, T. P. , Fonseca, C. M. & Guizzardi, G. https://doi.org/10.3233/FAIA231131 The use of foundational ontologies in biomedical research , Article 21. Bernabé, C. H., Queralt-Rosinach, N., Silva Souza, V. E., Bonino da Silva Santos, L. O. , Mons, B., Jacobsen, A. & Roos, M. https://doi.org/10.1186/s13326-023-00300-z Building expertise on FAIR through evolving Bring Your Own Data (BYOD) workshops: describing the data, software, and management- focused approaches and their evolution , 1-23 (E-pub ahead of print/First online). Bernabé, C. H., Thielemans, L., Kaliyaperumal, R., Carta, C., Zhang, S., van Gelder, C. W. G., Benis, N., da Silva Santos, L. O. B. , Cornet, R., Vieira, B. d. s., Lalout, N., Henriques, I., Ballesteros, A. c., Burger, K., Kersloot, M. g., Ehrhart, F., Van enckevort, E., Evelo, C. t., Gray, A. j. g., … Jacobsen, A. https://doi.org/10.1162/dint_a_00236 Joint Proceedings of the Onto4FAIR 2023 Workshops: collocated with 13th International Conference on Formal Ontology in Information Systems, FOIS 2023, Sherbrooke, QC, Canada, July 20, 2023 and 19th International Conference on Semantic Systems, SEMANTICS 2023 . HAL. Trojahn, C., Santos, L. O. B. d. S. , Guizzardi, G. , Jonquet, C., Katsumi, M., Sanfilippo, E. M., D'Souza, J. & Rula, A. A FAIR catalog of ontology-driven conceptual models , Article 102210. Sales, T. P. , Barcelos, P. P. F., Fonseca, C. M. , Souza, I. V., Romanenko, E., Bernabé, C. H., Bonino da Silva Santos, L. O. , Fumagalli, M., Kritz, J., Almeida, J. P. A. & Guizzardi, G. https://doi.org/10.1016/j.datak.2023.102210 Lifetime extension assessment of collected washing machines . University of Twente. Stiksma, F. The FAIR Data Point: Interfaces and Tooling , 184-201. Benhamed, O. M., Burger, K., Kaliyaperumal, R., Santos, L. O. B. d. S. , Suchánek, M., Slifka, J. & Wilkinson, M. D. https://doi.org/10.1162/dint_a_00161 FAIR Data Point: A FAIR-Oriented Approach for Metadata Publication , 163-183. Santos, L. O. B. d. S. , Burger, K., Kaliyaperumal, R. & Wilkinson, M. D. https://doi.org/10.1162/dint_a_00160 Towards a conceptual model for the FAIR Digital Object Framework . ArXiv.org. Santos, L. O. B. d. S. , Sales, T. P. , Fonseca, C. M. & Guizzardi, G. https://doi.org/10.48550/arXiv.2302.11894 Personal Health Train Architecture with Dynamic Cloud Staging , Article 14. Bonino da Silva Santos, L. O. , Ferreira Pires, L. , Graciano Martinez, V., Rebelo Moreira, J. L. & Silva Souza Guizzardi, R. https://doi.org/10.1007/s42979-022-01422-4 Ontological Representation of FAIR Principles: A Blueprint for FAIRer Data Sources In Advanced Information Systems Engineering: 35th International Conference, CAiSE 2023, Zaragoza, Spain, June 12–16, 2023, Proceedings (pp. 261-277). Springer. Bernasconi, A., García Simon, A., Guizzardi, G. , Santos, L. O. B. d. S. & Storey, V. C. https://doi.org/10.1007/978-3-031-34560-9_16 A goal-oriented method for FAIRification planning . Bernabé, C. H., Sales, T. P. , Schultes, E., van Ulzen, N., Jacobsen, A., da Silva Santos, L. O. B. , Mons, B. & Roos, M. 2022
The Comparative Anatomy of Nanopublications and FAIR Digital Objects , Article e94150. Schultes, E., Magagna, B., Kuhn, T., Suchánek, M., Bonino da Silva Santos, L. & Mons, B. https://doi.org/10.3897/rio.8.e94150 FAIR Digital Twins for Data-Intensive Research , Article 883341. Schultes, E., Roos, M., Bonino da Silva Santos, L. O. , Guizzardi, G. , Bouwman, J., Hankemeier, T., Baak, A. & Mons, B. https://doi.org/10.3389/fdata.2022.883341 Building a Community-Based FAIR Metadata Schema for Brazilian Agriculture and Livestock Trading Data In SEMPDW 2022 . Soares, F. M. , Corrêa, F. E., Pires, L. F. , da Silva Santos, L. O. B. , Drucker, D. P., Braghetto, K. R., de Abreu Moreira, D., Delbem, A. C. B., da Silva, R. F., da Silva Lopes, C. O. & Saraiva, A. M. https://ceur-ws.org/Vol-3235/paper26.pdf The use of Foundational Ontologies in Bioinformatics In SWAT4HCLS 2022 . Bernabé, C. H., Queralt Rosinach, N., Silva Souza, V. E., Bonino da Silva Santos, L. O. , Jacobsen, A., Mons, B. & Roos, M. https://ceur-ws.org/Vol-3127/paper-5.pdf 2021
Towards Semantic Description of Explainable Machine Learning Workflows In Proceedings - 2021 IEEE 25th International Enterprise Distributed Object Computing Conference Workshops, EDOCW 2021 (pp. 236-244). IEEE. Nakagawa, P. I., Ferreira Pires, L. , Rebelo Moreira, J. L. & Olavo Bonino, L. https://doi.org/10.1109/EDOCW52865.2021.00054 Semantic Description of Explainable Machine Learning Workflows for Improving Trust , Article 10804. Nakagawa, P. I., Pires, L. F. , Rebelo Moreira, J. L. , Bonino da Silva Santos, L. O. & Bukhsh, F. https://doi.org/10.3390/app112210804 Research profiles 
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